PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G01610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family AP2
Protein Properties Length: 406aa    MW: 45211.5 Da    PI: 4.6405
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G01610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384e-1276133155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  LPERR12G01610.1  76 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 133
                      57*****************99554433744577777********************98 PP

2AP238.13.8e-12176225156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      s+y+GV +++ +grW+A+I  +     +k+ +    +t eeAaka++ a+ +++g+
  LPERR12G01610.1 176 SKYRGVARHHHNGRWEARIGRVLG---NKYLY---LDTQEEAAKAYDLAAIEYRGA 225
                      89****99**********988422...5****...6799**************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-1076133IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1576142IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-1477142IPR001471AP2/ERF domain
SMARTSM003801.5E-2277147IPR001471AP2/ERF domain
PROSITE profilePS5103219.09877141IPR001471AP2/ERF domain
PRINTSPR003673.1E-67889IPR001471AP2/ERF domain
PfamPF008471.4E-7176224IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-12176234IPR016177DNA-binding domain
CDDcd000184.32E-21176234No hitNo description
PROSITE profilePS5103214.157177232IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-13177232IPR001471AP2/ERF domain
SMARTSM003801.9E-19177238IPR001471AP2/ERF domain
PRINTSPR003673.1E-6214234IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRKISSPDLS QPSSPSSPSS SSSSEDTSSP IPMACKRARR TQKNTTKAKR PKKESAAIKE  60
SSDPSANGGG GGKRSSIYRG VTRHRWTGRF EAHLWDKNCS TSLQNKKKGR QGAYDSEEAA  120
ARAYDLAALK YWGAETQLNF PLEEYEKERS EMEGVSREEY LASLRRRSSG FSRGVSKYRG  180
VARHHHNGRW EARIGRVLGN KYLYLDTQEE AAKAYDLAAI EYRGANAVTN FDISCYLDQP  240
QLLAQLQQES QVVPALHEEP QDDDQTENAA QELSSSEANT CSDNSEPLAV DDSAECMNEP  300
LLVDGIEESL WSSCLDYELD TMTGDYFSNS MNFSEWFNDE AFEGSMDHLF EGCSSITEGS  360
KDSSGLAEYN LFEECNMLEK DISDREGISP QPNNISCPQK MISVCN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2476260.0AB247626.1 Oryza sativa Japonica Group OsANTL mRNA for aintegumenta-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619972.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ6X5Y62e-88WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0D9XWH00.0A0A0D9XWH0_9ORYZ; Uncharacterized protein
STRINGBGIOSGA036704-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g03290.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.34e-67AP2 family protein